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Bacterivory of a mudflat nematode community under different environmental conditions ArchiMer
Pascal, P.y.; Dupuy, C; Richard, P; Rzeznik-orignac, J; Niquil, Nathalie.
The fate of the benthic bacterial biomass is a topic of major importance in understanding how softbottom environments function. Because of their high abundance, production and nutritional value, benthic bacteria may constitute an important food resource for benthic fauna. The trophic role of bacteria for a nematode community on the Brouage mudflat (Marennes-Ole´ron-France), dominated by three species: Chromadora macrolaima (64% of the abundance), Daptonema oxycerca (15%) and Ptycholaimellus jacobi (8%), was determined in grazing experiments using 15N pre-enriched bacteria. On intertidal flats, seasonal, tidal and circadian cycles induce strong variations in environmental conditions. Grazing experiments were performed in order to measure the effects of...
Tipo: Text Palavras-chave: Mudflat; Environmental factor; Grazing; Bacteria; Nematode.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4295.pdf
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Ballast water research in France : Current status ArchiMer
Masson, Daniel; Courtois, Olivier; Masson, Nadine; Guesdon, Stephane; Rocher, Gregory.
Due to important economic activities along the French oastline, the introduction of noxious organisms into French coastal waters, particularly by ship ballast water, may have serious consequences. After preliminary studies of ship movements in Charente Maritime, several samplings of ballast water and sediment were made. Samples were taken in five major harbours in France, along the Atlantic, Channel and Mediterranean coastlines. The main task of this first assessment was the research for exotic and possibly noxious phytoplancton. Clostridium and Vibrio bacteria were also tested for. The results are presented and discussed, with plans for further work.
Tipo: Text Palavras-chave: Bacteria; Phytoplancton; French coastal waters; Ballast water.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/2000/acte-7364.pdf
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Benthic foraminifera from the deep-water Niger delta (gulf of Guinea): Assessing present-day and past activity of hydrate pockmarks ArchiMer
Fontanier, Christophe; Koho, K. A.; Goni-urriza, M. S.; Deflandre, Bruno; Galaup, S.; Ivanovsky, A.; Gayet, Nicolas; Dennielou, Bernard; Gremare, Antoine; Bichon, S.; Gassie, C.; Anschutz, P.; Duran, R.; Reichart, G. J..
We present ecological and isotopic (δ18O and δ13C) data on benthic foraminifera sampled from 4 deep-sea stations in a pockmark field from the deep-water Niger delta (Gulf of Guinea, Equatorial Atlantic Ocean). In addition, a series of sedimentological and (bio)geochemical data are shown to back up foraminiferal observations. All stations are located within 1.2 km of each other, so prevailing oceanographic conditions can be assumed to be similar at each site. Two of the sites (GMMC-01 and GMMC-02) are located in a pockmark (named “pockmark A”) where current methane seepages were recorded by ROV observations. A third station (GMMC-03) is located in the topographic depression interpreted as a collapsed pockmark (named “pockmark B”). The fourth site (GMMC-04)...
Tipo: Text Palavras-chave: Niger delta; Hydrate pockmark; Foraminifera; Stable isotopes; Bacteria.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00211/32194/30628.pdf
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Binding of Hg by bacterial extracellular polysaccharide: a possible role in Hg tolerance ArchiMer
Cruz, Kimberly; Guezennec, Jean; Barkay, Tamar.
Bacteria employ adaptive mechanisms of mercury (Hg) tolerance to survive in environments containing elevated Hg concentrations. The potential of extracellular polysaccharides (EPS) production by bacteria as a mechanism of Hg tolerance has not been previously investigated. The objectives of this study were to determine if bacterial EPS sorb Hg, and if so does sorption provide protection against Hg toxicity. Purified EPS with different chemical compositions produced by bacterial isolates from microbial mats in French Polynesian atolls and deep-sea hydrothermal vents were assessed for Hg sorption. The data showed that EPS sorbed up to 82% of Hg from solution, that this sorption was dependent on EPS composition, and that sorption was a saturable mechanism. Hg...
Tipo: Text Palavras-chave: Mercury; Bacteria; Sorption; Tolerance; Exocellular polysaccharides.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00382/49348/49786.pdf
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Biodegradation du petrole en mer. Influence de l'apport d'azote et de phosphore sous forme minerale ArchiMer
Lepetit, J; Guiot, J; Martin, Y; Tagger, S.
To exploit the presence in the sea of microorganisms capable of degrading petroleum products a mineral fertilizer, containing immediatly assimilable nitrogen and phosphorus compounds, was used to increase the microbial population and therefore, the degradation potential of treated polluted waters. The fertilizer supply caused an increase in heterotrophic and hydrocarbon-splitting bacteria and an increase in the phytoplanktonic biomass. The latter is characterized by an increase in a few selected species; it constitutes an important supply of organic substances, and it is responsible for increasing the dissolved oxygen which is essential for petroleum oxidation. Supplying the fertilizer results in an increase in the treated water degradation potential and a...
Tipo: Text Palavras-chave: Bacteria; Microorganisms; Heterotrophic organisms; Phosphorus compounds; Nitrogen compounds; Fertilizers; Hydrocarbons; Biodegradation; Sea water.
Ano: 1984 URL: http://archimer.ifremer.fr/doc/1984/acte-1020.pdf
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Biodeterioration patterns found in dammar resin used as art material Electron. J. Biotechnol.
Romero-Noguera,Julio; Martín-Sánchez,Inés; López-Miras,María del Mar; Ramos-López,José Miguel; Bolívar-Galiano,Fernando.
Since the middle of the XIX century, when dammar became popular in Occident, this natural resin is one of the most used in art painting techniques as final protective coating (varnish) as well as a component of pictorial media. The present work is the first approach to the study of the microbiological biodeterioration of this artistic material, which can seriously affect the appearance and integrity of works of art when bad conservation conditions -especially high humidity levels- take place. 12 microorganisms, fungi and bacteria, came from collection and from oil paintings affected by biodeterioration patterns, were inoculated on test specimens prepared with varnish dammar. These were incubated and analyzed by GC-MS to determine both the microbiological...
Tipo: Journal article Palavras-chave: Bacteria; Biodeterioration; Dammar; Fungi; GC-MS.
Ano: 2010 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-34582010000300006
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Biological activity of the essential oils from Cinnamodendron dinisii and Siparuna guianensis BJM
Andrade,Milene Aparecida; Cardoso,Maria das Graças; Gomes,Marcos de Souza; Azeredo,Camila Maria Oliveira de; Batista,Luís Roberto; Soares,Maurilio José; Rodrigues,Leonardo Milani Avelar; Figueiredo,Ana Cristina S..
This study had analyzed the antibacterial, antifungal and trypanocidal activity of the essential oils from Cinnamodendron dinisii Schwacke (Canellaceae) and Siparuna guianensis Aublet (Siparunaceae). The essential oils were obtained from fresh leaves by hydrodistillation, using a modified Clevenger apparatus. Chemical analysis by gas-liquid chromatography coupled to mass spectrometry (GC-MS) showed that these essential oils are rich in monoterpene and sesquiterpene hydrocarbons. Activity against the pathogenic bacteria Escherichia coli, Listeria monocytogenes, Pseudomonas aeruginosa, Salmonella choleraesuis and Staphylococcus aureus was evaluated with the agar cavity diffusion method, while activity on the filamentous fungi Aspergillus flavus, Aspergillus...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Volatile oils; Fungi; Bacteria; Trypanosoma cruzi.
Ano: 2015 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822015000100189
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Bioluminescent bacteria: lux genes as environmental biosensors BJM
Nunes-Halldorson,Vânia da Silva; Duran,Norma Letícia.
Bioluminescent bacteria are widespread in natural environments. Over the years, many researchers have been studying the physiology, biochemistry and genetic control of bacterial bioluminescence. These discoveries have revolutionized the area of Environmental Microbiology through the use of luminescent genes as biosensors for environmental studies. This paper will review the chronology of scientific discoveries on bacterial bioluminescence and the current applications of bioluminescence in environmental studies, with special emphasis on the Microtox toxicity bioassay. Also, the general ecological significance of bioluminescence will be addressed.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Bacteria; Bioluminescence; Lux genes; Microtox toxicity bioassay.
Ano: 2003 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822003000200001
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Biomasa y distribución espacial del bacterioplancton en el sector norte de la plataforma continental argentina (34º S-41º S) OceanDocs
Hozbor, M.C.; Hernández, D.R.; Cucchi Colleoni, A.D.; Costagliola, M.C.; Peressutti, S.R..
The northern sector of the Argentine continental shelf (34º S-41º S) is a highly productive area that sustains important fishery resources like Argentine anchovy (Engraulis anchoita) and is characterized by the presence of frontal zones with retention of detritus and plankton. In marine environments the bacterioplankton represents one of the main components of the trophic nets and plays a key role in biogeochemical cycles. In this ecosystem biomass and bacterioplankton distribution as well as their relation to environmental variables were analyzed. The highest chlorophyll a values, not significantly related to bacterioplankton (p > 0.05), were found in frontal and coastal areas. Abundance, bacterial biomass and cell volume values ranged 0.48-5.42 x 106...
Tipo: Journal Contribution Palavras-chave: Picoplankton; Bacteria; Biomass; Fronts; Coastal zone; Abundance; Environmental factors; Geographical distribution.
Ano: 2013 URL: http://hdl.handle.net/1834/5498
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Biomass distribution and physiological capabilities of bacteria in the water column above a sea grass system. ArchiMer
Velimirov, B; Herndl, G; Kavka, G.
The distribution pattern of bacteria in the water column above and within a Posidonia oceanica bed near Ischia (off the Gulf of Naples) was investigated and correlated with DOC and POM data for autumn and winter. Data from samples of 5 stations along a transect from shallow to deep showed rather low bacterial densities (10 super(4).ml super(-1)) for both seasons. The number of attached bacteria was higher in late winter as compared to autumn when the leaves are shed from the stands. Except for occasional peaks DOC ranged between 1.5 and 4.5 mg C/1 while POM concentrations ranged form 4 to 14 mg AFDW.1 super(-1). Hydrolytic capabilities of isolated bacterial colonies showed that more carbohydrate substrates could be fermented in winter as compared to...
Tipo: Text Palavras-chave: Posidonia oceanica; Microorganisms; Physiology; Seasonal distribution; Algae; Bacteria; Particulate organic matter; Metabolism; Water column; Fermentation; Sea grass.
Ano: 1984 URL: http://archimer.ifremer.fr/doc/1984/acte-954.pdf
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Bionanoparticles, a green nanochemistry approach Electron. J. Biotechnol.
Cauerhff,Ana; Castro,Guillermo R.
Background: In the past decade, considerable attention has been paid for the development of novel strategies for the synthesis of different kind of nano-objects. Most of the current strategies are usually working by the use physical or chemical principles to develop a myriad of nano-objects with multiple applications. Main fields of nanotechnology applications range from catalysis, micro- and nano-electronics (semiconductors, single electrons transistors), non-linear optic devices, photo-electrochemistry to biomedicine, diagnostics, foods and environment, chemical analysis and others. Results: Two main avenues for nanoparticles synthesis: cell-free extract and cell cultivation have been reported. The state of art of both biotechnological approaches for...
Tipo: Journal article Palavras-chave: Bacteria; Bionanoparticles; Fermentation; Fungi green chemistry; Plant extracts.
Ano: 2013 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-34582013000300011
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Bioprospection of cellulolytic and lipolytic South Atlantic deep-sea bacteria Electron. J. Biotechnol.
Odisi,Estácio Jussie; Silvestrin,Marcela Bruschi; Takahashi,Rodrigo Yoji Uwamori; da Silva,Marcus Adonai Castro; Lima,André Oliveira de Souza.
Background: Cellulases and lipases have broad industrial application, which calls for an urgent exploration of microorganisms from extreme environments as valuable source of commercial enzyme. In this context, the present work describes the bioprospection and identification of deep-sea bacteria that produce cellulases and lipases, as well their optimal temperature of activity. Results: The first step of this study was the screening of cellulolytic and lipolytic deep-sea bacteria from sediment and water column, which was conducted with substrates linked with 4-Methylumbelliferyl. Among the 161 strains evaluated, 40 were cellulolytic, 23 were lipolytic and 5 exhibited both activities. Cellulolytic and lipolytic bacteria are more common in sediment than at...
Tipo: Journal article Palavras-chave: Bacteria; Cellulases; Deep-sea; Lipases.
Ano: 2012 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-34582012000500018
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Blow Your Nose, Shrimp! Unexpectedly Dense Bacterial Communities Occur on the Antennae and Antennules of Hydrothermal Vent Shrimp ArchiMer
Zbinden, Magali; Gallet, Alison; Szafranski, Kamil M.; Machon, Julia; Ravaux, Juliette; Leger, Nelly; Duperron, Sebastien.
In crustaceans, as in other animals, perception of environmental cues is of key importance for a wide range of interactions with the environment and congeners. Chemoreception involves mainly the antennae and antennules, which carry sensilla that detect water-borne chemicals. The functional importance of these as exchange surfaces in the shrimp's sensory perception requires them to remain free of any microorganism and deposit that could impair the fixation of odorant molecules on sensory neurons. We report here the occurrence of an unexpected dense bacterial colonization on surface of the antennae and antennules of four hydrothermal vent shrimp species. Microscopic observation, qPCR and 16S rRNA barcoding reveal the abundance, diversity and taxonomic...
Tipo: Text Palavras-chave: Hydrothermal; Shrimp; Alvinocarididae; Chemosensory perception; Antennules; Bacteria; Grooming.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00484/59527/62507.pdf
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Caloranaerobacter azorensis gen. nov., sp nov., an anaerobic thermophilic bacterium isolated from a deep-sea hydrothermal vent ArchiMer
Wery, Nathalie; Moricet, Jean-marc; Cueff, Valerie; Jean, Joelle; Pignet, Patricia; Lesongeur, Francoise; Cambon-bonavita, Marie-anne; Barbier, Georges.
A thermophilic, anaerobic, chemo-organotrophic bacterium, designated MV1087(T), was isolated from a deep-sea hydrothermal chimney sample collected from the Mid-Atlantic Ridge. The cells were straight, motile and stained Gram-negative. Growth was observed from 45 to 65 degreesC, with an optimum around 65 degreesC. No growth was observed at 40 or 70 degreesC. Growth was observed from pH 5.5 to 9.0 and the optimum pH was around 7. The salinity range for growth was 10-100 g sea salt l(-1) (corresponding to 6.5-65 g NaCl l(-1)) with an optimum at 30 g sea salt l(-1) (20 g NaCl l(-1)). Strain MV1087(T) was heterotrophic, able to ferment proteinaceous substrates, such as brain/heart infusion and gluten, and carbohydrates, such as glucose, xylan and starch. The...
Tipo: Text Palavras-chave: Thermophile; Deep sea vent; Caloranaerobacter azorensis; Caloranaerobacter; Bacteria.
Ano: 2001 URL: http://archimer.ifremer.fr/doc/2001/publication-586.pdf
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Capacité des moules dans la réduction des teneurs en nutriments et la charge bactérienne dans les effluents piscicoles OceanDocs
Romdhane, M.S.; Chebil Ajjabi, L.; El Abed, O..
L’effluent des élevages de poissons renferme des concentrations plus élevées en nutriments dissous et en particules en suspension que celles présentes dans l’eau entrante. Cet état entraine par conséquent, des problèmes d’ordre environnementaux affectant les eaux côtières dues à l’eutrophisation et l’augmentation de la turbidité. Afin d’améliorer la qualité de l’effluent avant son déversement dans le milieu naturel, l’utilisation des bivalves comme filtre biologique est une alternative adéquate. Cette étude analyse la capacité de la moule Mytilus galloprovincialis de réduire les teneurs en sels nutritifs et la charge bactérienne dans les effluents de loups Dicentrarchus labrax en élevage. L’effluent issu des bassins de grossissement est pompé directement...
Tipo: Journal Contribution Palavras-chave: Aquaculture effluents; Bacteria; Biofilters; Chlorophylls; Culture effects; Density; Effluents; Filtration; Fish; Mussel fisheries; Nitrogen; Nutrients (mineral); Phosphorus; Suspended particulate matter; Wastewater treatment; Water quality; Mytilus galloprovincialis; Wastewater treatment; Mussels; Nutrients; Http://aims.fao.org/aos/agrovoc/c_31155; Http://aims.fao.org/aos/agrovoc/c_25312; Http://aims.fao.org/aos/agrovoc/c_5010; Http://aims.fao.org/aos/agrovoc/c_5274.
Ano: 2008 URL: http://hdl.handle.net/1834/4154
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Capacité des moules dans la réduction des teneurs en nutriments et la charge bactérienne dans les effluents piscicoles OceanDocs
Chebil Ajjabi, L.; Romdhane, M.S.; El Abed, A..
L’effluent des élevages de poissons renferme des concentrations plus élevées en nutriments dissous et en particules en suspension que celles présentes dans l’eau entrante. Cet état entraine par conséquent, des problèmes d’ordre environnementaux affectant les eaux côtières dues à l’eutrophisation et l’augmentation de la turbidité. Afin d’améliorer la qualité de l’effluent avant son déversement dans le milieu naturel, l’utilisation des bivalves comme filtre biologique est une alternative adéquate. Cette étude analyse la capacité de la moule Mytilus galloprovincialis de réduire les teneurs en sels nutritifs et la charge bactérienne dans les effluents de loups Dicentrarchus labrax en élevage. L’effluent issu des bassins de grossissement est pompé directement...
Tipo: Journal Contribution Palavras-chave: Aquaculture effluents; Bacteria; Biofilters; Chlorophylls; Chlorophylls; Culture effects; Density; Effluents; Filtration; Fish; Mussel culture; Nitrogen; Nutrients (mineral); Phosphorus; Suspended particulate matter; Wastewater recycling; Wastewater treatment; Water quality; Fish; Nitrogen; Phosphorus; Water quality; Mussels; Nutrients; Bacteria; Chlorophylls; Density; Effluents; Filtration; Wastewater treatment.
Ano: 2008 URL: http://hdl.handle.net/1834/3756
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Caractérisation de la virulence d'une souche de Vibrio aestuarianus, pathogène de l'huître Crassostrea gigas ArchiMer
Labreuche, Yannick.
In France. shellfish production is a traditional. well-established industry. mainly based upon commercial farming of the Pacifie oyster. Crassostrea gigas. Since the 1980's, annual mass mortalities of C. gigas have been reported during summer. Several studies on this subject have demonstrated that these mortality outbreaks resulted from complex interactions between the physiologieal andJor genetic status of the oysters. environmental factors, and one or more infectious agents, among which are bacteria of the genus Vibrio.
Tipo: Text Palavras-chave: Huître; Crassostrea gigas; Bactéries; Vibrio aestuarlanus; Pathogénicité; Produits extracellulaires; Métalloprotéase; Hémocytes; Interactions hôte/pathogène; Oyster; Crassostrea gigas; Bacteria; Vibrio aestuarianus; Pathogenicity; Extracellular products; Metalloprotease; Hemocytes; Host/pathogen interactions.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/00034/14561/11859.pdf
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Caractérisation préliminaire à partir de la lagune de Bizerte (Tunisie) des bactéries tolérantes aux hydrocarbures aromatiques polycliques (HAPS) OceanDocs
Duran, R.; El Bour, M.; Ben Said, O.; Goni, M. S.; Dalleli, M.; Aissa, P..
م إنجاز هذه الدراسة لهدف عَزَلَ بَكْتِيريَا قادرة على استعمالتم إنجاز هذه الدراسة لهدف عَزَلَ بَكْتِيريَا قادرة على استعمال الهيدروكربنات و مقاومة للمعادن والمضادات الحيوية و في هذا الإطار تم أخذ عينات من الماء و التربة على مستوى 16محطة موزعة ببحيرة بنزرت. كما تم عزل البكتيريا بطريقة الإثراء باستعمال وسط مائي معدني زائد هيدروكربنات (fluoranthène) وقد توصلنا في عملية أولية من عزل 130 من الأجذال المختلفة من البكتيريا والتي تم تعريفها عبر الخاصيات الشكلية و البيوكيميائية. وأثبتت النتائج الأولية أن البكتيريا القادرة على استعمال الهيدروكربنات تنتمي لمجموعات مختلفةGram – و Gram+ على التَّوَالِي بنسبتي 65% و 35 %. وتضم مجموعة البكتيريا من نوع العصيات Gram – أكبر عدد من الأجذال المعزولة (74 %). ختاما نشير أن دراسة قدرة الأجذال على مقاومة المعادن...
Tipo: Journal Contribution Palavras-chave: Bacteria; Antibiotics; Biodegradation; Control resistance; Heavy metals; Hydrocarbons; Pollution monitoring; Antibiotics; Biodegradation; Heavy metals; Hydrocarbons; Http://aims.fao.org/aos/agrovoc/c_492; Http://aims.fao.org/aos/agrovoc/c_9261; Http://aims.fao.org/aos/agrovoc/c_2223; Http://aims.fao.org/aos/agrovoc/c_3719.
Ano: 2007 URL: http://hdl.handle.net/1834/4257
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Caracterización de cultivos iniciadores en productos cárnicos. Parte 1 OceanDocs
Beldarraín, T.; Cepero, Y.; Bruselas, A.; Santos, R.; Ramos, M.; Moya, Y.; Núñez, M.; Vergara, N..
En este trabajo se caracterizaron tecnológicamente, a escala de laboratorio, 5 cultivos iniciadores. Las propiedades tecnológicas evaluadas fueron pH en caldo glucosado, viabilidad del cultivo, tolerancia a elevada concentración de sal, inactivación a 60 ºC por 30 min, entre otras. Todos los cultivos, por sus aptitudes acidificantes y población celular se consideraron aptos para su empleo industrial y se pudieron categorizar como productores de baja y alta acidez.
Tipo: Journal Contribution Palavras-chave: Bacteria; Starters; Lactic acid bacteria; Microbial starters; Media production; Meat products.
Ano: 2008 URL: http://hdl.handle.net/1834/4896
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Caracterización y evaluación de la calidad del agua de la Bahía de Jaramijó-Provincia de Manabí durante el año 2008 OceanDocs
Rodriguez de Morán, A..
The current research was developed in Bahia of Jaramijó in the Province of Manabí during 2008, as part of the major project: " Characterization of the Ecuadorian Coast" that has been developing by INOCAR, in order to contribute to the proper use of resources and the environment. It characterized and assesses the results obtained in the research of the quality of water of Bahía of Jaramijó, taking into consideration the averages and their behaviour in each level studied in two different season in the year (wet-dry) and in two tide condition (ebb and flow) of the different parameter physical, chemical and microbiological. During the research was established that coastal marine waters of Bahía of Jaramijó, not show pollution of organic origin neither...
Tipo: Journal Contribution Palavras-chave: Water quality; Environmental legislation; Bacteria; Pollution; Oxygen.
Ano: 2013 URL: http://hdl.handle.net/1834/5758
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